phandango example datasets

This repository hosts the raw files which are used as examples in phandango. It should not be necessary to use these files yourself - they are loaded by clicking on the picture on the examples page of phandango.net. If you wish to re-use this data in any form, please contact the people listed below.

Load phandango.net to access these datasets

Datasets:

Streptococcus pneumoniae PMEN1 data (Gubbins / BRAT NextGen)

• Contact: Dr. Nick Croucher, Dr. Pekka Marttinen

• Raw files for phandango

• Publication: Croucher et al., Science, 2011

• Publication: Marttinen et al., Nucleic Acids Research, 2012

Streptococcus pneumoniae GWAS

• Contact: Dr. Claire Chewapreecha

• Raw files for phandango

• Publication: Chewapreecha et al., PLOS Genetics 2014

Streptococcus pneumoniae SPARC pan genome data

• Contact: Dr. Nick Croucher

• Raw files for phandango

• Publication: Croucher et al., Scientific Data 2015

Yersinia Enterocolitica (BRAT NextGen)

• Contact: Dr. Alan McNally

• Raw files for phandango

• Publication: Reuter et al., Microbial Genomics 2015

Salmonella Weltevreden (ROARY pan-genome)

• Contact: Carine Makendi

• Raw files for phandango

• Publication: Makendi et al., PLoS Negl Trop Dis 2016

Legionella pneumophila ST578 outbreak (Gubbins)

• Contact: Dr. Leonor Sánchez-Busó

• Raw files for phandango

• Publication: Sánchez-Busó et al., Nature Genetics 2014

Neisseria gonorrhoeae (Gubbins)

• Contact: Dr. Yonatan Grad

• Raw files for phandango

• Publication: Grad et al., Lancet Indec Dis 2014

Chlamydia Trachomatis (Metadata + Gubbins)

• Contact: Dr. Nick Thomson

• Raw files for phandango

• Publication: Hadfield et al., Genome Research 2017

Global Pneumococcal Sequencing Project Datasets

• Contact: Prof. Stephen D. Bentley and Dr. Rebecca Gladstone

• Raw files for phandango